Exhibit 99.1

PRESS RELEASE

Contact: Carole Collins

Director of Investor Relations

(770) 248-9600

INTERCEPT ANNOUNCES THIRD QUARTER 2003 FINANCIAL RESULTS

ATLANTA, GA (November 12, 2003) – InterCept, Inc. (Nasdaq: ICPT), a leading provider of technology products and services for financial institutions and merchants, today reported financial results for the three and nine months ended September 30, 2003.

Financial Results

Total revenues for the three months ended September 30, 2003 totaled $64.1 million, a 3.4% decrease compared with $66.3 million for the three months ended September 30, 2002. Total revenues from financial institution services grew to $49.5 million from $45.9 million, or 7.8%, from the third quarter of 2002, and customer reimbursements included in this total decreased to $3.1 million in the third quarter of 2003 from $4.4 million in the third quarter of 2002. Total revenues from merchant services in the third quarter of 2003 totaled $14.6 million, a 28.5% decrease from $20.4 million in the third quarter of 2002. Net income per common share totaled $18,000, or $0.00 per share (diluted), on 20.6 million average shares outstanding for the three months ended September 30, 2003, versus net income per common share of $2.8 million, or $0.14 per share (diluted), for the three months ended September 30, 2002.

“InterCept continues to be profitable for the year in spite of lower than expected earnings this quarter,” said Lynn Boggs, InterCept’s president and chief operating officer. “Revenues from our financial services division grew substantially, which we believe reflects that we have superior products and services for our customers. We have addressed the operational issues that affected us in the third quarter. In addition, we are now on schedule to complete the second phase of the Sovereign Bank conversion before year-end.”

Mr. Boggs continued, “Bank of America’s recent syndication of our credit facility to add four strong financial institutions further validates our strong presence in the marketplace. We are particularly gratified that Bank of America increased the facility from $50.0 million to $60.0 million to accommodate the interests of syndicate members that understand our business and the fact that we are a profitable company.

Income Statement Review

Total revenues were $64.1 million for the three months ended September 30, 2003 compared to $66.3 million for the three months ended September 30, 2002. Of the $64.1 million, 93% was recurring in nature. Total revenues from financial institution services grew to $49.5 million from $45.9 million, or 7.8%, in the third quarter of 2002, and customer reimbursements included in this total decreased to $3.1 million in the third quarter of 2003 from $4.4 million in the third quarter of 2002. Total revenues from merchant services in the third quarter of 2003 totaled $14.6 million, a 28.5% decrease from $20.4 million in the third quarter of 2002. Revenue from financial institution services increased entirely from internal growth. Revenue from merchant services was lower due to customer attrition in the merchant base.

Net Income totaled $18,000, or $0.00 per common share, in the third quarter of 2003, compared with net income of $2.8 million, or $0.14 per share (diluted), for the three months ended September 30, 2002.

Gross margins totaled approximately 48.2% for the third quarter of 2003 as compared to 48.9% for the third quarter of 2002. Gross margins decreased from the third quarter of 2002 due primarily to the operational issues and the Sovereign conversion described below.

Selling, general and administrative expenses as a percentage of total revenues totaled 39.3% as compared to 32.0% for the third quarter of 2002. This increase was due to operational issues and start-up costs related to Sovereign.

The effective tax rate for the second quarter of 2003 was 48.5% as compared to 37.2% for the third quarter of 2002. The increase in the effective rate is mainly due to lower pre-tax profits that resulted in a greater impact from non-deductible items.

Balance Sheet Review

InterCept’s outstanding indebtedness on its line of credit as of September 30, 2003 was $33.1 million. As of November 12, 2003, this amount has decreased to $26.0 million. InterCept closed the syndication of its $60.0 million line of credit with Bank of America and other banks on November 10, 2003.

Capital expenditures for the nine months ended September 30, 2003 were $19.6 million. The $19.6 million included $15.3 million for financial institution services and $4.3 million for merchant services. The $15.3 million for financial institution services included $6.5 million related to Sovereign.

Client payouts decreased to $36.4 million as of September 30, 2003 compared to $58.7 million as of December 31, 2002. This decrease is due to lower transaction volume and customer attrition in the merchant services division.

Operational Update

In its financial institution services division, InterCept experienced greater than expected conversion costs in Sovereign’s item processing in the third quarter and anticipates additional conversion delays in the fourth quarter. InterCept began transitioning the second half of Sovereign’s item and check processing services on November 3, 2003 and has completed the transition of 77 of the 273 Sovereign community banking offices located in the Mid-Atlantic area. InterCept anticipates completing the conversion of the remaining Sovereign community banking offices to InterCept’s check image processing services by year-end, but the conversion costs and additional delays will have resulted in a shortfall of $0.6 million during the fourth quarter of 2003.

The company experienced difficulties in combining two of its item processing centers, which resulted in expense overruns and a loss of expected savings from the combination of these two centers. These issues caused a shortfall in earnings expectations of approximately $1.2 million in the third quarter, and management expects an additional shortfall of $0.6 million in the fourth quarter.

Merchant results were below expectations due to an $0.8 million charge arising from a contract dispute, $0.4 million related to bank assessment charges and a $1.0 million shortfall due to customer attrition. The company expects continued weakness in the merchant division in the fourth quarter, which will impact its financial results.

2004 Earnings Guidance

InterCept plans to release guidance for 2004 on or before December 4, 2003.

Live Webcast Information

Anyone interested in listening to the analyst conference scheduled for 9:00 AM EST today should log on to www.intercept.net 10 minutes prior to the scheduled start time. Once on the web site, click on the Investor Relations tab and select Webcasts/Conference Calls. Archives of the conference presentations will also be available at the same URL address.

About InterCept

InterCept, Inc. is a single-source provider of a broad range of technologies, products and services that work together to meet the technology and operating needs of financial institutions and merchants. InterCept’s products and services include core data processing, check processing and imaging, electronic funds transfer, debit and credit card processing, data communications management, and related products and services. For more information about InterCept, go to www.intercept.net or call 770.248.9600.

This release contains forward-looking statements within the meaning of the securities laws that are based on current expectations, assumptions, estimates, and projections about InterCept and our industry. These forward-looking statements are not guarantees of future performance and are subject to risks and uncertainties, many of which are outside of InterCept’s control, that may cause actual results to differ materially from those expressed or implied by forward-looking statements. These risks and uncertainties include: whether InterCept can convert Sovereign Bank to InterCept’s item processing and check imaging centers in the time frames it expects; the effects of the recent MasterCard and Visa settlement; how and when the SLM loan situation will ultimately be resolved and the timing and amount of any charges related to that loan; the possible inaccuracy of InterCept’s estimates of the costs to defend and pursue litigation; and whether InterCept can meet its budget goals; continue to sustain its current internal growth rate or its total growth rate; successfully integrate acquisitions of assets and businesses and other operations it may acquire; continue to provide enhanced and new products and services that appeal to its financial institution and merchant customers; continue to have access to the debt and equity capital it needs to sustain its growth; and achieve its sales objectives. Other risks include whether InterCept can make changes to iBill’s business without suffering a further decline in its operating performance; the possibility that, notwithstanding these changes, credit card companies may fine InterCept again for excessive credit card charge-backs or other issues arising out of the its merchant services operations; and the possibility that the termination of customers or other changes in the merchant services business could affect its value and result in the impairment of that asset or other intangible assets, which would require InterCept to record an impairment charge in its statement of operations. For more information about some of these risks and uncertainties, please see the section in our most recent Quarterly Report on Form 10-Q entitled Management’s Discussion and Analysis of Financial Condition and Results of Operations – Disclosure Regarding Forward-Looking Statements.

InterCept, Inc.

Financial Highlights

(unaudited and in thousands, except per share data)

InterCept, Inc.

Condensed Consolidated Balance Sheets

(in thousands)

InterCept, Inc.

Condensed Consolidated Statement of Operations

Three Months Ended September 30, 2003

(unaudited and in thousands except per share data)

Reconciliation of GAAP Amounts to Non-GAAP Financial Measures

InterCept, Inc.

Condensed Consolidated Statement of Operations

Nine Months Ended September 30, 2003

(unaudited and in thousands except per share data)

Reconciliation of GAAP Amounts to Non-GAAP Financial Measures

InterCept, Inc. and Subsidiaries

Segment Information

(unaudited and in thousands)